miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164250720|gb|EV488130.1|EV488130 AAGAGATATAATTGACAAGAAAGAAAAATGGTTCTGCTAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGGA
ACGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGGCGATGC
CGACGAGTCCGACGACACCTGGGACACCGTTGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAAT
CCAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATGA
CTGGTTCGTACAGATTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAGTGGGAC
TTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCATATATAA
ATATTAACCAGGTTTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAGTTTTTCAAGAAGGAGGCCTC
AAAAACTTTCCTGTTTGTGTGTGTCTTTTTTTCTAACGTTTTCTCAGCAACCAACGGAGGCTCGAGACGGTCGTGCCGGA
AACTTGGCTCCTTGTTGGTACCTGCGTGGACTACCGTTTGCTGTAATATTTCCCTATTCCTTTGCTTACCGCGGGGGGCC
CCGGGAAGCTCCCGCGGATTGGGAGGCGGCGNGGGGAGGTGCCACCCTTCCTCGTGTTGTTACGGGGTG




Most similar to sp|Q05349|12KD_FRAAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  126 bits (316), Expect = 2e-28
 Identities = 59/99 (59%), Positives = 72/99 (72%)
 Frame = +1

Query: 28  MVLLEKLWDDVVAGPQPERGLGRLRKITTTPPLSTKDEASSMAMXXXXXXXXXXXXXVSA 207
           MVLL+KLWDD+VAGPQPERGLG LRK+     L  + E+S + M             +SA
Sbjct: 1   MVLLDKLWDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISA 60

Query: 208 RRDNVWRSVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 324
           R+DNVWRSVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 61  RKDNVWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99